ArchaeaCentre

This package provides default plots and functions that are used internally at the German Archaea Centre in Regensburg.

Installation instructions

Get the latest stable R release from CRAN. Then install the development of archaeacentre from GitHub with:

if (!requireNamespace("BiocManager", quietly = TRUE)) {
    install.packages("BiocManager")
}

BiocManager::install(c("remotes", "richardstoeckl/archaeacentre"))

Citation

Below is the citation output from using citation('archaeacentre') in R. Please run this yourself to check for any updates on how to cite archaeacentre.

print(citation("archaeacentre"), bibtex = TRUE)
#> To cite package 'archaeacentre' in publications use:
#> 
#>   Stöckl R (2025). _Defaults and functions for the German Archaea
#>   Centre in Regensburg_.
#>   https://github.com/richardstoeckl/archaeacentre/archaeacentre - R
#>   package version 1.0.2.
#> 
#> A BibTeX entry for LaTeX users is
#> 
#>   @Manual{,
#>     title = {Defaults and functions for the German Archaea Centre in Regensburg},
#>     author = {Richard Stöckl},
#>     year = {2025},
#>     note = {https://github.com/richardstoeckl/archaeacentre/archaeacentre - R package version 1.0.2},
#>   }

Please note that the archaeacentre was only made possible thanks to many other R and bioinformatics software authors, which are cited either in the vignettes and/or the paper(s) describing this package.

Development tools

• Continuous code testing is possible thanks to GitHub actions through usethis, remotes, and rcmdcheck customized to use Bioconductor’s docker containers and BiocCheck.
• The documentation website is automatically updated thanks to pkgdown.
• The code is styled automatically thanks to styler.
• The documentation is formatted thanks to devtools and roxygen2.

For more details, check the dev directory.

This package was developed using biocthis.